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Lateralization of brain function - Wikipedia
Language
Language functions such as grammar, vocabulary and literal meaning are typically lateralized to the left hemisphere, especially in right handed individuals.[3] While language production is left-lateralized in up to 90% of right-handers, it is more bilateral, or even right-lateralized, in approximately 50% of left-handers.[4]

Broca's area and Wernicke's area, two areas associated with the production of speech, are located in the left cerebral hemisphere for about 95% of right-handers, but about 70% of left-handers.[5]:69

Auditory and visual processing
The processing of visual and auditory stimuli, spatial manipulation, facial perception, and artistic ability are represented bilaterally.[4] Numerical estimation, comparison and online calculation depend on bilateral parietal regions[6][7] while exact calculation and fact retrieval are associated with left parietal regions, perhaps due to their ties to linguistic processing.[6][7]

...

Depression is linked with a hyperactive right hemisphere, with evidence of selective involvement in "processing negative emotions, pessimistic thoughts and unconstructive thinking styles", as well as vigilance, arousal and self-reflection, and a relatively hypoactive left hemisphere, "specifically involved in processing pleasurable experiences" and "relatively more involved in decision-making processes".

Chaos and Order; the right and left hemispheres: https://orthosphere.wordpress.com/2018/05/23/chaos-and-order-the-right-and-left-hemispheres/
In The Master and His Emissary, Iain McGilchrist writes that a creature like a bird needs two types of consciousness simultaneously. It needs to be able to focus on something specific, such as pecking at food, while it also needs to keep an eye out for predators which requires a more general awareness of environment.

These are quite different activities. The Left Hemisphere (LH) is adapted for a narrow focus. The Right Hemisphere (RH) for the broad. The brains of human beings have the same division of function.

The LH governs the right side of the body, the RH, the left side. With birds, the left eye (RH) looks for predators, the right eye (LH) focuses on food and specifics. Since danger can take many forms and is unpredictable, the RH has to be very open-minded.

The LH is for narrow focus, the explicit, the familiar, the literal, tools, mechanism/machines and the man-made. The broad focus of the RH is necessarily more vague and intuitive and handles the anomalous, novel, metaphorical, the living and organic. The LH is high resolution but narrow, the RH low resolution but broad.

The LH exhibits unrealistic optimism and self-belief. The RH has a tendency towards depression and is much more realistic about a person’s own abilities. LH has trouble following narratives because it has a poor sense of “wholes.” In art it favors flatness, abstract and conceptual art, black and white rather than color, simple geometric shapes and multiple perspectives all shoved together, e.g., cubism. Particularly RH paintings emphasize vistas with great depth of field and thus space and time,[1] emotion, figurative painting and scenes related to the life world. In music, LH likes simple, repetitive rhythms. The RH favors melody, harmony and complex rhythms.

...

Schizophrenia is a disease of extreme LH emphasis. Since empathy is RH and the ability to notice emotional nuance facially, vocally and bodily expressed, schizophrenics tend to be paranoid and are often convinced that the real people they know have been replaced by robotic imposters. This is at least partly because they lose the ability to intuit what other people are thinking and feeling – hence they seem robotic and suspicious.

Oswald Spengler’s The Decline of the West as well as McGilchrist characterize the West as awash in phenomena associated with an extreme LH emphasis. Spengler argues that Western civilization was originally much more RH (to use McGilchrist’s categories) and that all its most significant artistic (in the broadest sense) achievements were triumphs of RH accentuation.

The RH is where novel experiences and the anomalous are processed and where mathematical, and other, problems are solved. The RH is involved with the natural, the unfamiliar, the unique, emotions, the embodied, music, humor, understanding intonation and emotional nuance of speech, the metaphorical, nuance, and social relations. It has very little speech, but the RH is necessary for processing all the nonlinguistic aspects of speaking, including body language. Understanding what someone means by vocal inflection and facial expressions is an intuitive RH process rather than explicit.

...

RH is very much the center of lived experience; of the life world with all its depth and richness. The RH is “the master” from the title of McGilchrist’s book. The LH ought to be no more than the emissary; the valued servant of the RH. However, in the last few centuries, the LH, which has tyrannical tendencies, has tried to become the master. The LH is where the ego is predominantly located. In split brain patients where the LH and the RH are surgically divided (this is done sometimes in the case of epileptic patients) one hand will sometimes fight with the other. In one man’s case, one hand would reach out to hug his wife while the other pushed her away. One hand reached for one shirt, the other another shirt. Or a patient will be driving a car and one hand will try to turn the steering wheel in the opposite direction. In these cases, the “naughty” hand is usually the left hand (RH), while the patient tends to identify herself with the right hand governed by the LH. The two hemispheres have quite different personalities.

The connection between LH and ego can also be seen in the fact that the LH is competitive, contentious, and agonistic. It wants to win. It is the part of you that hates to lose arguments.

Using the metaphor of Chaos and Order, the RH deals with Chaos – the unknown, the unfamiliar, the implicit, the emotional, the dark, danger, mystery. The LH is connected with Order – the known, the familiar, the rule-driven, the explicit, and light of day. Learning something means to take something unfamiliar and making it familiar. Since the RH deals with the novel, it is the problem-solving part. Once understood, the results are dealt with by the LH. When learning a new piece on the piano, the RH is involved. Once mastered, the result becomes a LH affair. The muscle memory developed by repetition is processed by the LH. If errors are made, the activity returns to the RH to figure out what went wrong; the activity is repeated until the correct muscle memory is developed in which case it becomes part of the familiar LH.

Science is an attempt to find Order. It would not be necessary if people lived in an entirely orderly, explicit, known world. The lived context of science implies Chaos. Theories are reductive and simplifying and help to pick out salient features of a phenomenon. They are always partial truths, though some are more partial than others. The alternative to a certain level of reductionism or partialness would be to simply reproduce the world which of course would be both impossible and unproductive. The test for whether a theory is sufficiently non-partial is whether it is fit for purpose and whether it contributes to human flourishing.

...

Analytic philosophers pride themselves on trying to do away with vagueness. To do so, they tend to jettison context which cannot be brought into fine focus. However, in order to understand things and discern their meaning, it is necessary to have the big picture, the overview, as well as the details. There is no point in having details if the subject does not know what they are details of. Such philosophers also tend to leave themselves out of the picture even when what they are thinking about has reflexive implications. John Locke, for instance, tried to banish the RH from reality. All phenomena having to do with subjective experience he deemed unreal and once remarked about metaphors, a RH phenomenon, that they are “perfect cheats.” Analytic philosophers tend to check the logic of the words on the page and not to think about what those words might say about them. The trick is for them to recognize that they and their theories, which exist in minds, are part of reality too.

The RH test for whether someone actually believes something can be found by examining his actions. If he finds that he must regard his own actions as free, and, in order to get along with other people, must also attribute free will to them and treat them as free agents, then he effectively believes in free will – no matter his LH theoretical commitments.

...

We do not know the origin of life. We do not know how or even if consciousness can emerge from matter. We do not know the nature of 96% of the matter of the universe. Clearly all these things exist. They can provide the subject matter of theories but they continue to exist as theorizing ceases or theories change. Not knowing how something is possible is irrelevant to its actual existence. An inability to explain something is ultimately neither here nor there.

If thought begins and ends with the LH, then thinking has no content – content being provided by experience (RH), and skepticism and nihilism ensue. The LH spins its wheels self-referentially, never referring back to experience. Theory assumes such primacy that it will simply outlaw experiences and data inconsistent with it; a profoundly wrong-headed approach.

...

Gödel’s Theorem proves that not everything true can be proven to be true. This means there is an ineradicable role for faith, hope and intuition in every moderately complex human intellectual endeavor. There is no one set of consistent axioms from which all other truths can be derived.

Alan Turing’s proof of the halting problem proves that there is no effective procedure for finding effective procedures. Without a mechanical decision procedure, (LH), when it comes to … [more]
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september 2018 by nhaliday
Psychopathy by U.S. State by Ryan Murphy :: SSRN
Rentfrow et al. (2013) constructs a cross-section of the “Big Five” personality traits and demonstrates their relationship with outcomes variables for the continental United States and the District of Columbia. Hyatt et al. (Forthcoming) creates a means of describing psychopathy in terms of the Big Five personality traits. When these two findings are combined, a state-level estimate of psychopathy is produced. Among the typical predictions made regarding psychopathy, the variable with the closest univariate relationship with this new statistical aggregate is the percentage of the population in the state living in an urban area. There is not a clear univariate relationship with homicide rates.

Washington, D.C., harbors the greatest share of psychopaths in the US, "a fact that can be readily explained either by its very high population density or by the type of person who may be drawn a literal seat of power."
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june 2018 by nhaliday
Who We Are | West Hunter
I’m going to review David Reich’s new book, Who We Are and How We Got Here. Extensively: in a sense I’ve already been doing this for a long time. Probably there will be a podcast. The GoFundMe link is here. You can also send money via Paypal (Use the donate button), or bitcoins to 1Jv4cu1wETM5Xs9unjKbDbCrRF2mrjWXr5. In-kind donations, such as orichalcum or mithril, are always appreciated.

This is the book about the application of ancient DNA to prehistory and history.

height difference between northern and southern europeans: https://westhunt.wordpress.com/2018/03/29/who-we-are-1/
mixing, genocide of males, etc.: https://westhunt.wordpress.com/2018/03/29/who-we-are-2-purity-of-essence/
rapid change in polygenic traits (appearance by Kevin Mitchell and funny jab at Brad Delong ("regmonkey")): https://westhunt.wordpress.com/2018/03/30/rapid-change-in-polygenic-traits/
schiz, bipolar, and IQ: https://westhunt.wordpress.com/2018/03/30/rapid-change-in-polygenic-traits/#comment-105605
Dan Graur being dumb: https://westhunt.wordpress.com/2018/04/02/the-usual-suspects/
prediction of neanderthal mixture and why: https://westhunt.wordpress.com/2018/04/03/who-we-are-3-neanderthals/
New Guineans tried to use Denisovan admixture to avoid UN sanctions (by "not being human"): https://westhunt.wordpress.com/2018/04/04/who-we-are-4-denisovans/
also some commentary on decline of Out-of-Africa, including:
"Homo Naledi, a small-brained homonin identified from recently discovered fossils in South Africa, appears to have hung around way later that you’d expect (up to 200,000 years ago, maybe later) than would be the case if modern humans had occupied that area back then. To be blunt, we would have eaten them."

Live Not By Lies: https://westhunt.wordpress.com/2018/04/08/live-not-by-lies/
Next he slams people that suspect that upcoming genetic genetic analysis will, in most cases, confirm traditional stereotypes about race – the way the world actually looks.

The people Reich dumps on are saying perfectly reasonable things. He criticizes Henry Harpending for saying that he’d never seen an African with a hobby. Of course, Henry had actually spent time in Africa, and that’s what he’d seen. The implication is that people in Malthusian farming societies – which Africa was not – were selected to want to work, even where there was no immediate necessity to do so. Thus hobbies, something like a gerbil running in an exercise wheel.

He criticized Nicholas Wade, for saying that different races have different dispositions. Wade’s book wasn’t very good, but of course personality varies by race: Darwin certainly thought so. You can see differences at birth. Cover a baby’s nose with a cloth: Chinese and Navajo babies quietly breathe through their mouth, European and African babies fuss and fight.

Then he attacks Watson, for asking when Reich was going to look at Jewish genetics – the kind that has led to greater-than-average intelligence. Watson was undoubtedly trying to get a rise out of Reich, but it’s a perfectly reasonable question. Ashkenazi Jews are smarter than the average bear and everybody knows it. Selection is the only possible explanation, and the conditions in the Middle ages – white-collar job specialization and a high degree of endogamy, were just what the doctor ordered.

Watson’s a prick, but he’s a great prick, and what he said was correct. Henry was a prince among men, and Nick Wade is a decent guy as well. Reich is totally out of line here: he’s being a dick.

Now Reich may be trying to burnish his anti-racist credentials, which surely need some renewal after having pointing out that race as colloquially used is pretty reasonable, there’s no reason pops can’t be different, people that said otherwise ( like Lewontin, Gould, Montagu, etc. ) were lying, Aryans conquered Europe and India, while we’re tied to the train tracks with scary genetic results coming straight at us. I don’t care: he’s being a weasel, slandering the dead and abusing the obnoxious old genius who laid the foundations of his field. Reich will also get old someday: perhaps he too will someday lose track of all the nonsense he’s supposed to say, or just stop caring. Maybe he already has… I’m pretty sure that Reich does not like lying – which is why he wrote this section of the book (not at all logically necessary for his exposition of the ancient DNA work) but the required complex juggling of lies and truth required to get past the demented gatekeepers of our society may not be his forte. It has been said that if it was discovered that someone in the business was secretly an android, David Reich would be the prime suspect. No Talleyrand he.

https://westhunt.wordpress.com/2018/04/12/who-we-are-6-the-americas/
The population that accounts for the vast majority of Native American ancestry, which we will call Amerinds, came into existence somewhere in northern Asia. It was formed from a mix of Ancient North Eurasians and a population related to the Han Chinese – about 40% ANE and 60% proto-Chinese. Is looks as if most of the paternal ancestry was from the ANE, while almost all of the maternal ancestry was from the proto-Han. [Aryan-Transpacific ?!?] This formation story – ANE boys, East-end girls – is similar to the formation story for the Indo-Europeans.

https://westhunt.wordpress.com/2018/04/18/who-we-are-7-africa/
In some ways, on some questions, learning more from genetics has left us less certain. At this point we really don’t know where anatomically humans originated. Greater genetic variety in sub-Saharan African has been traditionally considered a sign that AMH originated there, but it possible that we originated elsewhere, perhaps in North Africa or the Middle East, and gained extra genetic variation when we moved into sub-Saharan Africa and mixed with various archaic groups that already existed. One consideration is that finding recent archaic admixture in a population may well be a sign that modern humans didn’t arise in that region ( like language substrates) – which makes South Africa and West Africa look less likely. The long-continued existence of homo naledi in South Africa suggests that modern humans may not have been there for all that long – if we had co-existed with homo naledi, they probably wouldn’t lasted long. The oldest known skull that is (probably) AMh was recently found in Morocco, while modern humans remains, already known from about 100,000 years ago in Israel, have recently been found in northern Saudi Arabia.

While work by Nick Patterson suggests that modern humans were formed by a fusion between two long-isolated populations, a bit less than half a million years ago.

So: genomics had made recent history Africa pretty clear. Bantu agriculuralists expanded and replaced hunter-gatherers, farmers and herders from the Middle East settled North Africa, Egypt and northeaat Africa, while Nilotic herdsmen expanded south from the Sudan. There are traces of earlier patterns and peoples, but today, only traces. As for questions back further in time, such as the origins of modern humans – we thought we knew, and now we know we don’t. But that’s progress.

https://westhunt.wordpress.com/2018/04/18/reichs-journey/
David Reich’s professional path must have shaped his perspective on the social sciences. Look at the record. He starts his professional career examining the role of genetics in the elevated prostate cancer risk seen in African-American men. Various social-science fruitcakes oppose him even looking at the question of ancestry ( African vs European). But they were wrong: certain African-origin alleles explain the increased risk. Anthropologists (and human geneticists) were sure (based on nothing) that modern humans hadn’t interbred with Neanderthals – but of course that happened. Anthropologists and archaeologists knew that Gustaf Kossina couldn’t have been right when he said that widespread material culture corresponded to widespread ethnic groups, and that migration was the primary explanation for changes in the archaeological record – but he was right. They knew that the Indo-European languages just couldn’t have been imposed by fire and sword – but Reich’s work proved them wrong. Lots of people – the usual suspects plus Hindu nationalists – were sure that the AIT ( Aryan Invasion Theory) was wrong, but it looks pretty good today.

Some sociologists believed that caste in India was somehow imposed or significantly intensified by the British – but it turns out that most jatis have been almost perfectly endogamous for two thousand years or more…

It may be that Reich doesn’t take these guys too seriously anymore. Why should he?

varnas, jatis, aryan invastion theory: https://westhunt.wordpress.com/2018/04/22/who-we-are-8-india/

europe and EEF+WHG+ANE: https://westhunt.wordpress.com/2018/05/01/who-we-are-9-europe/

https://www.nationalreview.com/2018/03/book-review-david-reich-human-genes-reveal-history/
The massive mixture events that occurred in the recent past to give rise to Europeans and South Asians, to name just two groups, were likely “male mediated.” That’s another way of saying that men on the move took local women as brides or concubines. In the New World there are many examples of this, whether it be among African Americans, where most European ancestry seems to come through men, or in Latin America, where conquistadores famously took local women as paramours. Both of these examples are disquieting, and hint at the deep structural roots of patriarchal inequality and social subjugation that form the backdrop for the emergence of many modern peoples.
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march 2018 by nhaliday
The Politics of Mate Choice
TABLE 1 Spousal Concordance on 16 Traits Pearson’s r (n)

Church attendance .714 (4950)
W-P Index (28 items) .647 (3984)
Drinking frequency .599 (4984)
Political party support .596 (4547)
Education .498 (4957)
Height .227 (4964)
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december 2017 by nhaliday
Lynn Margulis | West Hunter
Margulis went on to theorize that symbiotic relationships between organisms are the dominant driving force of evolution. There certainly are important examples of this: as far as I know, every complex organism that digests cellulose manages it thru a symbiosis with various prokaryotes. Many organisms with a restricted diet have symbiotic bacteria that provide essential nutrients – aphids, for example. Tall fescue, a popular turf grass on golf courses, carries an endosymbiotic fungus. And so on, and on on.

She went on to oppose neodarwinism, particularly rejecting inter-organismal competition (and population genetics itself). From Wiki: [ She also believed that proponents of the standard theory “wallow in their zoological, capitalistic, competitive, cost-benefit interpretation of Darwin – having mistaken him… Neo-Darwinism, which insists on [the slow accrual of mutations by gene-level natural selection], is in a complete funk.”[8] ‘

...

You might think that Lynn Margulis is an example of someone that could think outside the box because she’d never even been able to find it in the first place – but that’s more true of autistic types [like Dirac or Turing], which I doubt she was in any way. I’d say that some traditional prejudices [dislike of capitalism and individual competition], combined with the sort of general looniness that leaves one open to unconventional ideas, drove her in a direction that bore fruit, more or less by coincidence. A successful creative scientist does not have to be right about everything, or indeed about much of anything: they need to contribute at least one new, true, and interesting thing.

https://westhunt.wordpress.com/2017/11/25/lynn-margulis/#comment-98174
“A successful creative scientist does not have to be right about everything, or indeed about much of anything: they need to contribute at least one new, true, and interesting thing.” Yes – it’s like old bands. As long as they have just one song in heavy rotation on the classic rock stations, they can tour endlessly – it doesn’t matter that they have only one or even no original members performing. A scientific example of this phenomena is Kary Mullins. He’ll always have PCR, even if a glowing raccoon did greet him with the words, “Good evening, Doctor.”

Nobel Savage: https://www.lrb.co.uk/v21/n13/steven-shapin/nobel-savage
Dancing Naked in the Mind Field by Kary Mullis

jet fuel can't melt steel beams: https://westhunt.wordpress.com/2017/11/25/lynn-margulis/#comment-98201
You have to understand a subject extremely well to make arguments why something couldn’t have happened. The easiest cases involve some purported explanation violating a conservation law of physics: that wasn’t the case here.

Do I think you’re a hotshot, deeply knowledgeable about structural engineering, properties of materials, using computer models, etc? A priori, pretty unlikely. What are the odds that you know as much simple mechanics as I do? a priori, still pretty unlikely. Most likely, you’re talking through your hat.

Next, the conspiracy itself is unlikely: quite a few people would be involved – unlikely that none of them would talk. It’s not that easy to find people that would go along with such a thing, believe it or not. The Communists were pretty good at conspiracy, but people defected, people talked: not just Whittaker Chambers, not just Igor Gouzenko.
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november 2017 by nhaliday
Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia | Nature Genetics
We conducted a genome-wide association study (GWAS) with replication in 36,180 Chinese individuals and performed further transancestry meta-analyses with data from the Psychiatry Genomics Consortium (PGC2). Approximately 95% of the genome-wide significant (GWS) index alleles (or their proxies) from the PGC2 study were overrepresented in Chinese schizophrenia cases, including ∼50% that achieved nominal significance and ∼75% that continued to be GWS in the transancestry analysis. The Chinese-only analysis identified seven GWS loci; three of these also were GWS in the transancestry analyses, which identified 109 GWS loci, thus yielding a total of 113 GWS loci (30 novel) in at least one of these analyses. We observed improvements in the fine-mapping resolution at many susceptibility loci. Our results provide several lines of evidence supporting candidate genes at many loci and highlight some pathways for further research. Together, our findings provide novel insight into the genetic architecture and biological etiology of schizophrenia.
study  biodet  behavioral-gen  psychiatry  disease  GWAS  china  asia  race  generalization  genetics  replication 
november 2017 by nhaliday
Genetic influences on measures of the environment: a systematic review | Psychological Medicine | Cambridge Core
Background. Traditional models of psychiatric epidemiology often assume that the relationship between individuals and their environment is unidirectional, from environment to person. Accumulating evidence from developmental and genetic studies has made this perspective increasingly untenable.

Results. We identified 55 independent studies organized into seven categories: general and specific stressful life events (SLEs), parenting as reported by child, parenting reported by parent, family environment, social support, peer interactions, and marital quality. Thirty-five environmental measures in these categories were examined by at least two studies and produced weighted heritability estimates ranging from 7% to 39%, with most falling between 15% and 35%. The weighted heritability for all environmental measures in all studies was 27%. The weighted heritability for environmental measures by rating method was: self-report 29%, informant report 26%, and direct rater or videotape observation (typically examining 10 min of behavior) 14%.
study  meta-analysis  biodet  behavioral-gen  genetics  population-genetics  🌞  regularizer  environmental-effects  GxE  psychiatry  epidemiology  composition-decomposition 
october 2017 by nhaliday
Fear and Loathing in Psychology - The Unz Review
Warne and Astle looked at 29 best-selling undergraduate textbooks, which is where psychology students learn about intelligence, because less than 10% of graduate courses offer an intelligence option.

3.3% of textbook space is dedicated to intelligence. Given its influence, this is not very much.

The most common topics start well, with IQ and Spearman’s g, but do not go on to the best validated, evidence-led Cattell-Horn-Carol meta-analytic summary, but a side-stream, speculative triarchic theory from Sternberg; and a highly speculative and non-specific sketch of an idea about multiple intelligences Gardner. The last is a particular puzzle, since it really is a whimsical notion that motor skill is no different from analytical problem solving. All must have prizes.
Commonly, environmental influences are discussed, genetic ones rarely.

What Do Undergraduates Learn About Human Intelligence? An Analysis of Introductory Psychology Textbooks: https://drive.google.com/file/d/0B3c4TxciNeJZOTl3clpiX0JKckk/view

Education or Indoctrination? The Accuracy of Introductory Psychology Textbooks in Covering Controversial Topics and Urban Legends About Psychology: http://sci-hub.la/https://link.springer.com/article/10.1007/s12144-016-9539-7

Twenty-four leading introductory psychology textbooks were surveyed for their coverage of a number of controversial topics (e.g., media violence, narcissism epidemic, multiple intelligences) and scientific urban legends (e.g., Kitty Genovese, Mozart Effect) for their factual accuracy. Results indicated numerous errors of factual reporting across textbooks, particularly related to failing to inform students of the controversial nature of some research fields and repeating some scientific urban legends as if true. Recommendations are made for improving the accuracy of introductory textbooks.

Mapping the scale of the narcissism epidemic: Increases in narcissism 2002–2007 within ethnic groups: https://www.sciencedirect.com/science/article/pii/S0092656608000949

The increasing numbers of Asian-Americans at the UCs over time may have masked changes in narcissism, as Asian-Americans score lower on the NPI. When examined within ethnic groups, Trzesniewski et al.’s data show that NPI scores increased significantly between 2002 and 2007 at twice the rate of the yearly change found over 24 years in Twenge et al. (2008a). The overall means also show a significant increase 2002–2007. Thus the available evidence suggests that college students are endorsing progressively more narcissistic personality traits over the generations.

Birth Cohort Increases in Narcissistic Personality Traits Among American College Students, 1982–2009: http://journals.sagepub.com/doi/abs/10.1177/1948550609355719

Both studies demonstrate significant increases in narcissism over time (Study 1 d = .37, 1982–2008, when campus is controlled; Study 2 d = .37, 1994–2009). These results support a generational differences model of individual personality traits reflecting changes in culture.

could this just be a selection effect (more people attending)?
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july 2017 by nhaliday
Polygenic transmission disequilibrium confirms that common and rare variation act additively to create risk for autism spectrum disorders : Nature Genetics : Nature Research
Autism spectrum disorder (ASD) risk is influenced by common polygenic and de novo variation. We aimed to clarify the influence of polygenic risk for ASD and to identify subgroups of ASD cases, including those with strongly acting de novo variants, in which polygenic risk is relevant. Using a novel approach called the polygenic transmission disequilibrium test and data from 6,454 families with a child with ASD, we show that polygenic risk for ASD, schizophrenia, and greater educational attainment is over-transmitted to children with ASD. These findings hold independent of proband IQ. We find that polygenic variation contributes additively to risk in ASD cases who carry a strongly acting de novo variant. Lastly, we show that elements of polygenic risk are independent and differ in their relationship with phenotype. These results confirm that the genetic influences on ASD are additive and suggest that they create risk through at least partially distinct etiologic pathways.

https://en.wikipedia.org/wiki/Transmission_disequilibrium_test
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july 2017 by nhaliday
A genome-wide polygenic approach to HIV uncovers link to inflammatory bowel disease and identifies potential novel genetic variants | bioRxiv
We further showed that the genetic overlap between HIV acquisition and schizophrenia is likely driven in part by their shared overlap with cannabis use and sexual behavior.
study  bio  preprint  biodet  behavioral-gen  GWAS  genetic-correlation  correlation  trivia  cocktail  disease  sex  sexuality  drugs  psychiatry  genetics 
june 2017 by nhaliday
Links 6/17: Silinks Is Golden | Slate Star Codex
Vox tries its hand at an explainer about the Sam Harris / Charles Murray interview. Some criticism from Gene Expression, The Misrepresentation Of Genetic Science In The Vox Piece On Race And IQ. From Elan, The Cherry-Picked Science In Vox’s Charles Murray Article. From Sam Harris, an accusation that the article just blatantly lies about the contents of the publicly available podcast (one of the authors later apologizes for this, but Vox hasn’t changed the article). From Professor Emeritus Richard Haier, who called it a “junk science piece” and tried to write a counterpiece for Vox (they refused to publish it, but it’s now up on Quillette). And even from other Vox reporters who thought it was journalistically shoddy. As for me, I think the article was as good as it could be under the circumstances – while it does get some things wrong and is personally unfair to Murray, from a scientific point of view I’m just really glad that the piece admits that IQ is real, meaningful, and mostly hereditary. This was the main flashpoint of the original debate twenty-five years ago, it’s more important than the stuff on the achievement gap, and the piece gets it entirely right. I think this sort of shift from debating the very existence of intelligence to debating the details is important, very productive, and worth praising even when the details are kind of dubious. This should be read in the context of similar recent articles like NYMag’s Yes, There Is A Genetic Component To Intelligence and Nature’s Intelligence Research Should Not Be Held Back By Its Past.

interesting comment thread on media treatment of HBD and effect on alt-right: http://slatestarcodex.com/2017/06/14/links-617-silinks-is-golden/#comment-510641

AskHistorians: Did Roman legionnaires get PTSD? “For the Romans, people experiencing intrusive memories were said to be haunted by ghosts…those haunted by ghosts are constantly depicted showing many symptoms which would be familiar to the modern PTSD sufferer.”

The best new blog I’ve come across recently is Sam[]zdat, which among other things has been reviewing various great books. Their Seeing Like A State review is admittedly better than mine, but I most appreciated The Meridian Of Her Greatness, based on a review of Karl Polanyi’s The Great Transformation. Go for the really incisive look at important ideas and social trends, stay for the writing style.

What lesson should we draw about Democrats’ prospects from the Republicans’ 7 point win in the Montana special election? (point, counterpoint).

An analysis showing Donald Trump’s speech patterns getting less fluent and more bizarre over the past few years – might he be suffering from mild age-related cognitive impairment? Also, given that this can be pretty subtle (cue joke about Trump) and affect emotional stability in complicated ways, should we be more worried about electing seventy-plus year old people to the presidency?

PNAS has a good (albeit kind of silly) article on claims that scientific progress has slowed.

New study finds that growth mindset is not associated with scholastic aptitude in a large sample of university applicants. Particularly excited about this one because an author said that my blog posts about growth mindset inspired the study. I’m honored to have been able to help the progress of science!
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june 2017 by nhaliday
Genomic analysis of family data reveals additional genetic effects on intelligence and personality | bioRxiv
methodology:
Using Extended Genealogy to Estimate Components of Heritability for 23 Quantitative and Dichotomous Traits: http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1003520
Pedigree- and SNP-Associated Genetics and Recent Environment are the Major Contributors to Anthropometric and Cardiometabolic Trait Variation: http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005804

Missing Heritability – found?: https://westhunt.wordpress.com/2017/02/09/missing-heritability-found/
There is an interesting new paper out on genetics and IQ. The claim is that they have found the missing heritability – in rare variants, generally different in each family.

Some of the variants, the ones we find with GWAS, are fairly common and fitness-neutral: the variant that slightly increases IQ confers the same fitness (or very close to the same) as the one that slightly decreases IQ – presumably because of other effects it has. If this weren’t the case, it would be impossible for both of the variants to remain common.

The rare variants that affect IQ will generally decrease IQ – and since pleiotropy is the norm, usually they’ll be deleterious in other ways as well. Genetic load.

Happy families are all alike; every unhappy family is unhappy in its own way.: https://westhunt.wordpress.com/2017/06/06/happy-families-are-all-alike-every-unhappy-family-is-unhappy-in-its-own-way/
It now looks as if the majority of the genetic variance in IQ is the product of mutational load, and the same may be true for many psychological traits. To the extent this is the case, a lot of human psychological variation must be non-adaptive. Maybe some personality variation fulfills an evolutionary function, but a lot does not. Being a dumb asshole may be a bug, rather than a feature. More generally, this kind of analysis could show us whether particular low-fitness syndromes, like autism, were ever strategies – I suspect not.

It’s bad new news for medicine and psychiatry, though. It would suggest that what we call a given type of mental illness, like schizophrenia, is really a grab-bag of many different syndromes. The ultimate causes are extremely varied: at best, there may be shared intermediate causal factors. Not good news for drug development: individualized medicine is a threat, not a promise.

see also comment at: https://pinboard.in/u:nhaliday/b:a6ab4034b0d0

https://www.reddit.com/r/slatestarcodex/comments/5sldfa/genomic_analysis_of_family_data_reveals/
So the big implication here is that it's better than I had dared hope - like Yang/Visscher/Hsu have argued, the old GCTA estimate of ~0.3 is indeed a rather loose lower bound on additive genetic variants, and the rest of the missing heritability is just the relatively uncommon additive variants (ie <1% frequency), and so, like Yang demonstrated with height, using much more comprehensive imputation of SNP scores or using whole-genomes will be able to explain almost all of the genetic contribution. In other words, with better imputation panels, we can go back and squeeze out better polygenic scores from old GWASes, new GWASes will be able to reach and break the 0.3 upper bound, and eventually we can feasibly predict 0.5-0.8. Between the expanding sample sizes from biobanks, the still-falling price of whole genomes, the gradual development of better regression methods (informative priors, biological annotation information, networks, genetic correlations), and better imputation, the future of GWAS polygenic scores is bright. Which obviously will be extremely helpful for embryo selection/genome synthesis.

The argument that this supports mutation-selection balance is weaker but plausible. I hope that it's true, because if that's why there is so much genetic variation in intelligence, then that strongly encourages genetic engineering - there is no good reason or Chesterton fence for intelligence variants being non-fixed, it's just that evolution is too slow to purge the constantly-accumulating bad variants. And we can do better.
https://rubenarslan.github.io/generation_scotland_pedigree_gcta/

The surprising implications of familial association in disease risk: https://arxiv.org/abs/1707.00014
https://spottedtoad.wordpress.com/2017/06/09/personalized-medicine-wont-work-but-race-based-medicine-probably-will/
As Greg Cochran has pointed out, this probably isn’t going to work. There are a few genes like BRCA1 (which makes you more likely to get breast and ovarian cancer) that we can detect and might affect treatment, but an awful lot of disease turns out to be just the result of random chance and deleterious mutation. This means that you can’t easily tailor disease treatment to people’s genes, because everybody is fucked up in their own special way. If Johnny is schizophrenic because of 100 random errors in the genes that code for his neurons, and Jack is schizophrenic because of 100 other random errors, there’s very little way to test a drug to work for either of them- they’re the only one in the world, most likely, with that specific pattern of errors. This is, presumably why the incidence of schizophrenia and autism rises in populations when dads get older- more random errors in sperm formation mean more random errors in the baby’s genes, and more things that go wrong down the line.

The looming crisis in human genetics: http://www.economist.com/node/14742737
Some awkward news ahead
- Geoffrey Miller

Human geneticists have reached a private crisis of conscience, and it will become public knowledge in 2010. The crisis has depressing health implications and alarming political ones. In a nutshell: the new genetics will reveal much less than hoped about how to cure disease, and much more than feared about human evolution and inequality, including genetic differences between classes, ethnicities and races.

2009!
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june 2017 by nhaliday
Is Pharma Research Worse Than Chance? | Slate Star Codex
Here’s one hypothesis: at the highest level, the brain doesn’t have that many variables to affect, or all the variables are connected. If you smack the brain really really hard in some direction or other, you will probably treat some psychiatric disease. Drugs of abuse are ones that smack the brain really hard in some direction or other. They do something. So find the psychiatric illness that’s treated by smacking the brain in that direction, and you’re good.

Actual carefully-researched psychiatric drugs are exquisitely selected for having few side effects. The goal is something like an SSRI – mild stomach discomfort, some problems having sex, but overall you can be on them forever and barely notice their existence. In the grand scheme of things their side effects are tiny – in most placebo-controlled studies, people have a really hard time telling whether they’re in the experimental or the placebo group.

...

But given that we’re all very excited to learn about ketamine and MDMA, and given that if their original promise survives further testing we will consider them great discoveries, it suggests we chose the wrong part of the tradeoff curve. Or at least it suggests a different way of framing that tradeoff curve. A drug that makes you feel extreme side effects for a few hours – but also has very strong and lasting treatment effects – is better than a drug with few side effects and weaker treatment effects. That suggests a new direction pharmaceutical companies might take: look for the chemicals that have the strongest and wackiest effects on the human mind. Then see if any of them also treat some disease.

I think this is impossible with current incentives. There’s too little risk-tolerance at every stage in the system. But if everyone rallied around the idea, it might be that trying the top hundred craziest things Alexander Shulgin dreamed up on whatever your rat model is would be orders of magnitude more productive than whatever people are doing now.
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june 2017 by nhaliday
Electroconvulsive therapy: a crude, controversial out-of-favor treatme – Coyne of the Realm
various evidence that ECT works

I will soon be offering e-books providing skeptical looks at mindfulness and positive psychology, as well as scientific writing courses on the web as I have been doing face-to-face for almost a decade.

https://www.coyneoftherealm.com/collections/frontpage

Coyne of the Realm Takes a Skeptical Look at Mindfulness — Table of Contents: https://www.coyneoftherealm.com/pages/coyne-of-the-realm-takes-a-skeptical-look-at-mindfulness-table-of-contents

Mind the Hype: A Critical Evaluation and Prescriptive Agenda for Research on Mindfulness and Meditation: http://journals.sagepub.com/doi/10.1177/1745691617709589
Where's the Proof That Mindfulness Meditation Works?: https://www.scientificamerican.com/article/wheres-the-proof-that-mindfulness-meditation-works1/
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june 2017 by nhaliday
The Audacious Epigone: White despair in the General Social Survey
1/4 WWC report having been depressed, rates still a bit higher for whites among upper classes
Prevalence of Depression by Race/Ethnicity: Findings From the National Health and Nutrition Examination Survey III: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1449298/
A Cross-Ethnic Comparison of Lifetime Prevalence Rates of Anxiety Disorders: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2931265/

Racial-Ethnic Differences in Psychiatric Diagnoses and Treatment Across 11 Health Care Systems in the Mental Health Research Network: https://ps.psychiatryonline.org/doi/full/10.1176/appi.ps.201500217
gnon  data  analysis  general-survey  race  class  coming-apart  malaise  emotion  stress  meaningness  multi  study  epidemiology  public-health  the-bones  phalanges  sociology  psychiatry  usa  africa  latin-america  pop-diff  pro-rata  database 
may 2017 by nhaliday
Reversal of Fortune | West Hunter
https://westhunt.wordpress.com/2012/12/03/reversal-of-fortune-2/#comment-5940
“particularly in the fetus”. You’d think so, but people have looked at Dutch draftees who were in the womb during the famine of 1944. They found no effects of famine exposure on Ravens scores at age 19. Schizophrenia doubled, though. Schiz also doubled in the Chinese cohort exposed to the Great Leap Forward famine.

Cohort Profile: The Dutch Hunger Winter Families Study: https://academic.oup.com/ije/article/36/6/1196/814573
Nutrition and Mental Performance: https://sci-hub.bz/10.1126/science.178.4062.708
Schizophrenia after prenatal exposure to the Dutch Hunger Winter of 1944-1945: https://sci-hub.bz/10.1001/archpsyc.1992.01820120071010
Prenatal famine exposure and cognition at age 59 years: https://sci-hub.bz/10.1093/ije/dyq261

https://westhunt.wordpress.com/2012/12/03/reversal-of-fortune-2/#comment-5960
You might be right. There is reason to suspect that prenatal exposure to alcohol is far riskier in some populations than others – in particular populations that have limited historical exposure to alcohol. Fetal Alcohol Syndrome (FAS) is very rare in France, for example – yet they drink, I’m told.

https://westhunt.wordpress.com/2012/12/03/reversal-of-fortune-2/#comment-5961
The kind of conservatism that shows up politically doesn’t have any predictive value. In other words, liars and morons. They’re why God made baseball bats. Once upon a time, I said this: “The American right doesn’t have room for anyone who knows jack shit about anything, or whose predictions have ever come true.” I’ll stick with that.

full quote here: http://www.rpgcodex.net/forums/index.php?threads/planescape-torment-problems.9208/
The American right doesn't have room for anyone who knows jack shit about anything, or whose predictions have ever come true. Of course they're all liars. In the words of one of their semi-prominent members, himself plenty despicable: "Science, logic, rational inquiry, thoughtful reflection, mean nothing to them. It's all posturing and moral status games and sucking up to halfwits like GWB and clinging to crackpot religion, and of course amoral careerism. " I think my correspondent forgot to mention their propensity for eating shit and rolling around in their own vomit, but nobody's perfect.

lol:
https://westhunt.wordpress.com/2012/12/03/reversal-of-fortune-2/#comment-6045
I’ve mused that it’s generally believed that iodine benefits females more than males, and the timing of iodization in the US matches up reasonably well with the rise of feminism…
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may 2017 by nhaliday
Polymorphisms and Load | West Hunter
Anyhow, we now have some estimates of the relative influence of common variants on various traits (from recent Visscher-type papers) . The fraction of genetic variation that can be explained by common variants is about half for height and IQ, one-third for schizophrenia, one-quarter for BMI, and about one-fifth for personality, as measured by standard personality measures, which I don’t have much faith in. If I had to guess, and at this point I do, the more that trait variation is a deviation from the selective optimum, rather than being orthogonal to fitness, the more it is influenced by load.
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may 2017 by nhaliday
Links 5/17: Rip Van Linkle | Slate Star Codex
More on Low-Trust Russia: Do Russian Who Wants To Be A Millionaire contestants avoid asking the audience because they expect audience members to deliberately mislead them?

Xenocrypt on the math of economic geography: “A party’s voters should get more or less seats based on the shape of the monotonic curve with integral one they can be arranged in” might sound like a very silly belief, but it is equivalent to the common mantra that you deserve to lose if your voters are ‘too clustered’”

Okay, look, I went way too long between writing up links posts this time, so you’re getting completely dated obsolete stuff like Actually, Neil Gorsuch Is A Champion Of The Little Guy. But aside from the Gorsuch reference this is actually pretty timeless – basically an argument for strict constructionism on the grounds that “a flexible, living, bendable law will always tend to be bent in the direction of the powerful.”

Otium: Are Adult Developmental Stages Real? Looks at Kohlberg, Kegan, etc.

I mentioned the debate over 5-HTTLPR, a gene supposedly linked to various mental health outcomes, in my review of pharmacogenomics. Now a very complete meta-analysis finds that a lot of the hype around it isn’t true. This is pretty impressive since there are dozens of papers claiming otherwise, and maybe the most striking example yet of how apparently well-replicated a finding can be and still fail to pan out.

Rootclaim describes itself as a crowd-sourced argument mapper. See for example its page on who launched the chemical attack in Syria.

Apparently if you just kill off all the cells that are growing too old, you can partly reverse organisms’ aging (paper, popular article)

The Politics Of The Gene: “Contrary to expectations, however, we find little evidence that it is more common for whites, the socioeconomically advantaged, or political conservatives to believe that genetics are important for health and social outcomes.”

Siberian Fox linked me to two studies that somewhat contradicted my minimalist interpretation of childhood trauma here: Alemany on psychosis and Turkheimer on harsh punishment.

Lyrebird is an AI project which, if fed samples of a person’s voice, can read off any text you want in the same voice. See their demo with Obama, Trump, and Hillary (I find them instantly recognizable but not at all Turing-passing). They say making this available is ethical because it raises awareness of the potential risk, which a Facebook friend compared to “selling nukes to ISIS in order to raise awareness of the risk of someone selling nukes to ISIS.”

Freddie deBoer gives lots of evidence that there is no shortage of qualified STEM workers relative to other fields and the industry is actually pretty saturated. But Wall Street Journal seems to think they have evidence for the opposite? Curious what all of the tech workers here think.

Scott Sumner: How Can There Be A Shortage Of Construction Workers? That is, is it at all plausible that (as help wanted ads would suggest) there are areas where construction companies can’t find unskilled laborers willing to work for $90,000/year? Sumner splits this question in two – first, an economics question of why an efficient market wouldn’t cause salaries to rise to a level that guarantees all jobs get filled. And second, a political question of how this could happen in a country where we’re constantly told that unskilled men are desperate because there are no job opportunities for them anymore. The answers seem to be “there’s a neat but complicated economics reason for the apparent inefficiency” and “the $90,000 number is really misleading but there may still be okay-paying construction jobs going unfilled and that’s still pretty strange”.

Study which is so delightfully contrarian I choose to reblog it before reading it all the way through: mandatory class attendance policies in college decrease grades by preventing students from making rational decisions about when and how to study.
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may 2017 by nhaliday
Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network
Towards explaining non-shared-environment effects on intelligence, psychiatric disorders, and other cognitive traits - developmental noise such as post-conception mutations in individual cells or groups of cells
pdf  study  psychology  cog-psych  neuro  neuro-nitgrit  brain-scan  biodet  genetics  genomics  GWAS  🌞  psychiatry  behavioral-gen  mutation  environmental-effects  roots  org:nat  gwern  random  autism  proposal  signal-noise  developmental  composition-decomposition 
may 2017 by nhaliday
Secular decline in testosterone levels - Rogue Health and Fitness
A Population-Level Decline in Serum Testosterone Levels in American Men: http://sci-hub.tw/10.1210/jc.2006-1375
Secular trends in sex hormones and fractures in men and women: http://www.eje-online.org/content/166/5/887.full.pdf
https://twitter.com/toad_spotted/status/984543033285898246
https://archive.is/dcruu
Small n and older sample, but interesting that while testosterone decreases have been large for men they’ve been even larger (in % terms) for women; wonder if this contributes to declining pregnancy and sexual frequency, rising depression.

https://www.labcorp.com/assets/11476
http://www.theamericanconservative.com/articles/sperm-killers-and-rising-male-infertility/
https://www.theguardian.com/lifeandstyle/2017/jul/25/sperm-counts-among-western-men-have-halved-in-last-40-years-study
https://www.weforum.org/agenda/2017/08/most-men-in-the-us-and-europe-could-be-infertile-by-2060
Strangelove: https://youtu.be/N1KvgtEnABY?t=67

https://www.scientificamerican.com/article/sperm-count-dropping-in-western-world/
https://news.ycombinator.com/item?id=14855796
https://news.ycombinator.com/item?id=14857588
People offering human-centric explanations like cell phones: Note also that the sperm quality of dogs has decreased 30% since 1988.

mendelian rand.:
https://www.ncbi.nlm.nih.gov/pubmed/28448539
1 SD genetically instrumented increase in BMI was associated with a 0.25 SD decrease in serum testosterone
https://twitter.com/SilverVVulpes/status/857902555489341441

Ibuprofen linked to male infertility: study: https://nypost.com/2018/01/08/ibuprofen-linked-to-male-infertility-study/
http://www.pnas.org/content/115/4/E715.full

Tucker Carlson: "Men Seem To Be Becoming Less Male": https://www.realclearpolitics.com/video/2018/03/08/tucker_carlson_men_seem_to_be_becoming_less_male.html
Carlson interviewed Dr. Jordan Peterson who blamed the "insidious" movement being driven by the "radical left" that teaches there a problem of "toxic masculinity." He said ideological policies focus on "de-emphasizing masculinity may be part of the problem."

...

Those are the numbers. They paint a very clear picture: American men are failing, in body, mind and spirit. This is a crisis. Yet our leaders pretend it’s not happening. They tell us the opposite is true: Women are victims, men are oppressors. To question that assumption is to risk punishment. Even as women far outpace men in higher education, virtually every college campus supports a women’s studies department, whose core goal is to attack male power. Our politicians and business leaders internalize and amplify that message. Men are privileged. Women are oppressed. Hire and promote and reward accordingly.
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may 2017 by nhaliday
Allelic Differentiation Of Complex Trait Loci Across Human Populations | bioRxiv
We observed variation in allelic differentiation between populations at tissue-specific expression quantitative trait loci (eQTL), with greatest effects found for genes expressed in a region of the brain that has been linked to schizophrenia and bipolar disorder. Consistent with this, genome-wide association study regions also showed high levels of population differentiation for these diseases suggesting that loci linked to neurological function evolve rapidly. Clear differences for genetic structure in populations were observed for closely related complex human phenotypes. We show that the evolutionary forces acting at pleiotropic loci are often neutral by comparing directional effects of traits under selection. Our results illustrate the value of within species comparisons to understanding complex trait evolution.
study  bio  preprint  sapiens  pop-diff  neuro  neuro-nitgrit  psychiatry  psychology  cog-psych  behavioral-gen  recent-selection  biodet 
april 2017 by nhaliday
Annotating Greg Cochran’s interview with James Miller
https://westhunt.wordpress.com/2017/04/05/interview-2/
opinion of Scott and Hanson: https://westhunt.wordpress.com/2017/04/05/interview-2/#comment-90238
Greg's methodist: https://westhunt.wordpress.com/2017/04/05/interview-2/#comment-90256
https://westhunt.wordpress.com/2017/04/05/interview-2/#comment-90299
You have to consider the relative strengths of Japan and the USA. USA was ~10x stronger, industrially, which is what mattered. Technically superior (radar, Manhattan project). Almost entirely self-sufficient in natural resources. Japan was sure to lose, and too crazy to quit, which meant that they would lose after being smashed flat.
--
There’s a fairly common way of looking at things in which the bad guys are not at fault because they’re bad guys, born that way, and thus can’t help it. Well, we can’t help it either, so the hell with them. I don’t think we had to respect Japan’s innate need to fuck everybody in China to death.

https://westhunt.wordpress.com/2017/03/25/ramble-on/
https://westhunt.wordpress.com/2017/03/24/topics/
https://soundcloud.com/user-519115521/greg-cochran-part-1
2nd part: https://pinboard.in/u:nhaliday/b:9ab84243b967

some additional things:
- political correctness, the Cathedral and the left (personnel continuity but not ideology/value) at start
- joke: KT impact = asteroid mining, every mass extinction = intelligent life destroying itself
- Alawites: not really Muslim, women liberated because "they don't have souls", ended up running shit in Syria because they were only ones that wanted to help the British during colonial era
- solution to Syria: "put the Alawites in NYC"
- Zimbabwe was OK for a while, if South Africa goes sour, just "put the Boers in NYC" (Miller: left would probably say they are "culturally incompatible", lol)
- story about Lincoln and his great-great-great-grandfather
- skepticism of free speech
- free speech, authoritarianism, and defending against the Mongols
- Scott crazy (not in a terrible way), LW crazy (genetics), ex.: polyamory
- TFP or microbio are better investments than stereotypical EA stuff
- just ban AI worldwide (bully other countries to enforce)
- bit of a back-and-forth about macroeconomics
- not sure climate change will be huge issue. world's been much warmer before and still had a lot of mammals, etc.
- he quite likes Pseudoerasmus
- shits on modern conservatism/Bret Stephens a bit
org:med  west-hunter  scitariat  summary  links  podcast  audio  big-picture  westminster  politics  culture-war  academia  left-wing  ideology  biodet  error  crooked  bounded-cognition  stories  history  early-modern  africa  developing-world  death  mostly-modern  deterrence  japan  asia  war  meta:war  risk  ai  climate-change  speculation  agriculture  environment  prediction  religion  islam  iraq-syria  gender  dominant-minority  labor  econotariat  cracker-econ  coalitions  infrastructure  parasites-microbiome  medicine  low-hanging  biotech  terrorism  civil-liberty  civic  social-science  randy-ayndy  law  polisci  government  egalitarianism-hierarchy  expression-survival  disease  commentary  authoritarianism  being-right  europe  nordic  cohesion  heuristic  anglosphere  revolution  the-south  usa  thinking  info-dynamics  yvain  ssc  lesswrong  ratty  subculture  values  descriptive  epistemic  cost-disease  effective-altruism  charity  econ-productivity  technology  rhetoric  metameta  ai-control  critique  sociology  arms  paying-rent  parsimony  writing  realness  migration  eco 
april 2017 by nhaliday
Interview Greg Cochran by Future Strategist
https://westhunt.wordpress.com/2016/08/10/interview/

- IQ enhancement (somewhat apprehensive, wonder why?)
- ~20 years to CRISPR enhancement (very ballpark)
- cloning as an alternative strategy
- environmental effects on IQ, what matters (iodine, getting hit in the head), what doesn't (schools, etc.), and toss-ups (childhood/embryonic near-starvation, disease besides direct CNS-affecting ones [!])
- malnutrition did cause more schizophrenia in Netherlands (WW2) and China (Great Leap Forward) though
- story about New Mexico schools and his children (mostly grad students in physics now)
- clever sillies, weird geniuses, and clueless elites
- life-extension and accidents, half-life ~ a few hundred years for a typical American
- Pinker on Harvard faculty adoptions (always Chinese girls)
- parabiosis, organ harvesting
- Chicago economics talk
- Catholic Church, cousin marriage, and the rise of the West
- Gregory Clark and Farewell to Alms
- retinoblastoma cancer, mutational load, and how to deal w/ it ("something will turn up")
- Tularemia and Stalingrad (ex-Soviet scientist literally mentioned his father doing it)
- germ warfare, nuclear weapons, and testing each
- poison gas, Haber, nerve gas, terrorists, Japan, Syria, and Turkey
- nukes at https://en.wikipedia.org/wiki/Incirlik_Air_Base
- IQ of ancient Greeks
- history of China and the Mongols, cloning Genghis Khan
- Alexander the Great vs. Napoleon, Russian army being late for meetup w/ Austrians
- the reason why to go into Iraq: to find and clone Genghis Khan!
- efficacy of torture
- monogamy, polygamy, and infidelity, the Aboriginal system (reverse aging wives)
- education and twin studies
- errors: passing white, female infanticide, interdisciplinary social science/economic imperialism, the slavery and salt story
- Jewish optimism about environmental interventions, Rabbi didn't want people to know, Israelis don't want people to know about group differences between Ashkenazim and other groups in Israel
- NASA spewing crap on extraterrestrial life (eg, thermodynamic gradient too weak for life in oceans of ice moons)
west-hunter  interview  audio  podcast  being-right  error  bounded-cognition  history  mostly-modern  giants  autism  physics  von-neumann  math  longevity  enhancement  safety  government  leadership  elite  scitariat  econotariat  cracker-econ  big-picture  judaism  iq  recent-selection  🌞  spearhead  gregory-clark  2016  space  xenobio  equilibrium  phys-energy  thermo  no-go  🔬  disease  gene-flow  population-genetics  gedanken  genetics  evolution  dysgenics  assortative-mating  aaronson  CRISPR  biodet  variance-components  environmental-effects  natural-experiment  stories  europe  germanic  psychology  cog-psych  psychiatry  china  asia  prediction  frontier  genetic-load  realness  time  aging  pinker  academia  medicine  economics  chicago  social-science  kinship  tribalism  religion  christianity  protestant-catholic  the-great-west-whale  divergence  roots  britain  agriculture  farmers-and-foragers  time-preference  cancer  society  civilization  russia  arms  parasites-microbiome  epidemiology  nuclear  biotech  deterrence  meta:war  terrorism  iraq-syria  MENA  foreign-poli 
march 2017 by nhaliday
Epidemiology of autism - Wikipedia
https://spectrumnews.org/news/school-survey-india-reveals-low-autism-prevalence/
This Is How Much of Autism Is Genetic: http://time.com/4956316/how-much-of-autism-is-genetic/
Indeed, when Sandin tracked autism diagnoses over time among the sibling pairs, he found that genetics likely accounts for around 83% of the disorder. That compares to nearly 90% reported in previous studies of twins only. Using the new model, environmental factors probably contribute around 17% to the risk of developing autism.
sapiens  medicine  genetics  variance-components  science-anxiety  psychiatry  disease  neuro  autism  👽  epidemiology  wiki  reference  biodet  paternal-age  behavioral-gen  public-health  multi  news  org:mag  org:sci  india  asia  data  sib-study  study  summary  org:lite 
march 2017 by nhaliday
Cat Ladies | West Hunter
hmm...:
If toxo naturally can make people like cat piss, it’s already preadapted to become (with suitable genetic engineering) the model system for many kinds of infectious behavior modifiers.
west-hunter  sapiens  parasites-microbiome  disease  toxo-gondii  neuro  psychiatry  nature  discussion  commentary  gwern  medicine  🌞  embodied  scitariat  hmm  biotech  biohacking  retrofit  public-health  model-organism  pro-rata  epidemiology  drugs  pharma 
march 2017 by nhaliday
De novo mutations in regulatory elements cause neurodevelopmental disorders | bioRxiv
De novo mutations in hundreds of different genes collectively cause 25-42% of severe developmental disorders (DD). The cause in the remaining cases is largely unknown. The role of de novo mutations in regulatory elements affecting known DD-associated genes or other genes is essentially unexplored. We identified de novo mutations in three classes of putative regulatory elements in almost 8,000 DD patients. Here we show that de novo mutations in highly conserved fetal-brain active elements are significantly and specifically enriched in neurodevelopmental disorders. We identified a significant two-fold enrichment of recurrently mutated elements. We estimate that, genome-wide, de novo mutations in fetal-brain active elements are likely to be causal for 1-3% of patients without a diagnostic coding variant and that only a small fraction (<2%) of de novo mutations in these elements are pathogenic. Our findings represent a robust estimate of the contribution of de novo mutations in regulatory elements to this genetically heterogeneous set of disorders, and emphasise the importance of combining functional and evolutionary evidence to delineate regulatory causes of genetic disorders.
study  preprint  bio  sapiens  biodet  genetics  genomics  genetic-load  mutation  developmental  neuro  psychiatry  QTL  🌞  epidemiology  behavioral-gen 
march 2017 by nhaliday
Summary | EWG's 2017 Shopper's Guide to Pesticides in Produce
https://www.hsph.harvard.edu/news/features/health-benefits-organic-food-farming-report/
Three long-term birth cohort studies in the U.S. suggest that pesticides are harming children’s brains. In these studies, researchers found that women’s exposure to pesticides during pregnancy, measured through urine samples, was associated with negative impacts on their children’s IQ and neurobehavioral development, as well as with ADHD [attention deficit hyperactivity disorder] diagnoses. Also, one of the studies looked at structural brain growth using magnetic resonance imaging and found that the gray matter was thinner in children the higher their mothers’ exposure to organophosphates, which are used widely in pesticides. I think that’s quite scary.
org:health  data  analysis  health  food  hypochondria  embodied-street-fighting  embodied  reference  sanctity-degradation  multi  org:edu  science-anxiety  study  summary  developmental  neuro  psychiatry 
march 2017 by nhaliday
The Relation of Toxoplasma Infection and Sexual Attraction to Fear, Danger, Pain, and Submissiveness - Jul 28, 2016
A cross-sectional cohort study performed on 36,564 subjects (5,087 Toxoplasma free and 741 Toxoplasma infected) showed that infected and noninfected subjects differ in their sexual behavior, fantasies, and preferences when age, health, and the size of the place where they spent childhood were controlled (F(24, 3719) = 2.800, p < .0001). In agreement with our a priori hypothesis, infected subjects are more often aroused by their own fear, danger, and sexual submission although they practice more conventional sexual activities than Toxoplasma-free subjects. We suggest that the later changes can be related to a decrease in the personality trait of novelty seeking in infected subjects, which is potentially a side effect of increased concentration of dopamine in their brain.
study  bio  sapiens  disease  parasites-microbiome  neuro  psychiatry  sex  embodied  🌞  nature  biodet  evopsych  psychology  neuro-nitgrit  intervention  science-anxiety  toxo-gondii  emotion  sexuality  behavioral-gen  public-health  solid-study 
march 2017 by nhaliday
It's Beyond My Control: A Cross-Temporal Meta-Analysis of Increasing Externality in Locus of Control, 1960-2002 - Dec 21, 2016
Two meta-analyses found that young Americans increasingly believe their lives are controlled by outside forces rather than their own efforts. Locus of control scores became substantially more external (about .80 standard deviations) in college student and child samples between 1960 and 2002. The average college student in 2002 had a more external locus of control than 80% of college students in the early 1960s. Birth cohort/time period explains 14% of the variance in locus of control scores. The data included 97 samples of college students (n = 18,310) and 41 samples of children ages 9 to 14 (n = 6,554) gathered from dissertation research. The results are consistent with an alienation model positing increases in cynicism, individualism, and the self-serving bias. The implications are almost uniformly negative, as externality is correlated with poor school achievement, helplessness, ineffective stress management, decreased self-control, and depression.

cultural or biological?
study  psychology  cog-psych  social-psych  self-control  discipline  individualism-collectivism  ethics  psychiatry  stress  the-monster  trends  higher-ed  education  human-capital  usa  epidemiology  malaise  science-anxiety  trust  sociology  domestication  current-events  pessimism  social-capital  allodium  social-norms  public-health  madisonian  chart  stylized-facts  zeitgeist  rot  the-bones  volo-avolo  bootstraps 
march 2017 by nhaliday
Social Epistasis Amplifies the Fitness Costs of Deleterious Mutations, Engendering Rapid Fitness Decline Among Modernized Populations | SpringerLink
- Michael A. Woodley

We argue that in social species, interorganismal gene-gene interactions, which in previous literatures have been termed social epistasis, allow genomes carrying deleterious mutations to reduce via group-level pleiotropy the fitness of others, including noncarriers. This fitness reduction occurs by way of degradation of group-level processes that optimize the reproductive ecology of a population for intergroup competition through, among other mechanisms, suppression of free-riding.

--

Fitness indicators theory (Houle 2000; Miller 2000) predicts that the behavioral and physiological condition of prospective partners strongly influences female mate choice in particular, as these constitute honest indicators of underlying genetic quality. Furthermore, as deleterious mutations are pleiotropic (i.e., they can influence the development of multiple traits simultaneously), they are a source of genetic correlation among diverse behavioral and physiological domains, yielding a latent general fitness factor( f ). This optimizes the efficiency of sexual selection, as selection for quality with respect to one domain will increase the probability of selection for quality “across the board” (Houle 2000; Miller 2000). If purifying selection is primarily cryptic—working by virtue of those lower in f simply being less successful in competition for mates and therefore producing fewer offspring relative to those higher in the factor—then considerably less reproductive failure is needed to solve the mutation load paradox (19% instead of 88% based on simulations in Leseque et al. 2012).

...

Theoretical work involving humans suggests a loss of intrinsic fitness of around 1% per generation in the populations of modernized countries (Lynch 2016; Muller 1950). Thus, these might yet be undergoing mutational meltdown, albeit very gradually (i.e., over the course of centuries)

...

An interesting observation is that the fitness of the populations of modernized nations does appear to be rapidly decreasing—although not in a manner consonant with the direct action of deleterious mutations on the fitness of individuals (as per the mutation load paradox).

...

Increased education has furthermore encouraged individuals to trade fertility against opportunities to enhance their social status and earning power, with the largest fitness losses occurring among those with high status who potentially carry fewer deleterious mutations (i.e., by virtue of possessing higher levels of traits that exhibit some sensitivity to mutation load, such as general intelligence; Spain et al. 2015; Woodley of Menie et al. 2016a). Hitherto not considered is the possibility that the demographic transition represents a potential change in the fitness characteristics of the group-level extended phenotype of modernized populations, indicating that there might exist pathways through which deleterious mutations that accumulate due to ecological mildness could pathologically alter fertility tradeoffs in ways that might account for the maladaptive aspects of the fertility transition (e.g., subreplacement fertility; Basten, Lutz and Scherbov, 2013).

...

Cooperation, though offering significant fitness benefits to individual organisms and groups, involves some costs for cooperators in order to realize mutual gains for all parties. Free riders are individuals that benefit from cooperation without suffering any of the costs needed to sustain it. Hence, free riders enjoy a fitness advantage relative to cooperators via the former’s parasitism on the latter.

...

The balance of selection can alternate between the different levels depending on the sorts of selective challenges that a population encounters. For example, group selection may operate on human populations during times of intergroup conflict (i.e., warfare), whereas during times of peace, selection may tend to favor the fitness of individuals instead (Woodley and Figueredo 2013; Wilson 2002). A major factor that seems to permit group-level selection to be viable under certain ecological regimes is the existence of free-rider controls, i.e., features of the group’s social ecology that curb the reproductive fitness of the carriers of “selfish” genetic variants (MacDonald 1994; Wilson 2002).

...

High-status individuals participate in the generation and vertical cultural transmission of free-rider controls—these take the form of religious and ideological systems which make a virtue out of behaviors that overtly benefit the group, and a vice out of those that only favor individual-level fitness, via the promotion of ethnocentrism, martyrdom, and displays of commitment (MacDonald 1994, 2009, 2010; Wilson 2002). Humans are furthermore equipped with specialized mental adaptations for coordinating as part of a group, such as effortful control—the ability to override implicit behavioral drives via the use of explicit processing systems, which allow them to regulate their behavior based on what is optimal for the group (MacDonald 2008). The interaction between individuals of different degrees of status, i.e., those that generate and maintain cultural norms and those who are merely subject to them, therefore constitutes a form of social epistasis, as the complex patterns of interactions among genomes that characterize human culture have the effect of regulating both individual- and group-level (via the curbing of free-riding) fitness (MacDonald 2009, 2010).

Mutations that push the behavior of high-status individuals away from the promotion of group-selected norms may promote a breakdown of or otherwise alter these social epistatic interactions, causing dysregulation of the group’s reproductive ecology. Behavioral changes are furthermore a highly likely consequence of mutation accumulation, as “behavior” (construed broadly) is a large potential target for new mutations (Miller 2000; Lynch 2016) 1 owing to the fact that approximately 84% of all genes in the human genome are involved in some aspect of brain development and/or maintenance (Hawrylycz et al. 2012).

Consistent with the theorized role of group-level (cultural) regulatory processes in the maintenance of fitness optima, positive correlations exist between religiosity (a major freerider control; MacDonald 1994; Wilson 2002) and fertility, both at the individual differences and cross-cultural levels (Meisenberg 2011). Religiosity has declined in modernized nations—a process that has gone hand-in-hand with the rise of a values system called postmaterialism (Inglehart 1977), which is characterized by the proliferation of individualistic, secular, and antihierarchical values (Welzel 2013). The holding of these values is negatively associated with fertility, both at the individual level (when measured as political liberalism; Goldstone et al. 2011) and across time and cultures (Inglehart and Appel 1989). The rise of postmaterialist values is also associated with increasingly delayed onset of reproduction (Klien 1990) which directly increases the (population) mutation load.

Pathological Altruism

Some of the values embodied in postmaterialism have been linked to the pathological altruism phenomenon, i.e., forms of altruism that damage the intended recipients or givers of largesse (Oakley et al. 2012; Oakley 2013). Virtues associated with altruism such as kindness, fidelity, magnanimity, and heroism, along with quasi-moral traits associated with personality and mental health, may be under sexual selection and might therefore be sensitive, through the f factor, to the deleterious effects of accumulating mutations (Miller 2007).

...

Another form of pathologically altruistic behavior that Oakley (2013) documents is self-righteousness, which may be increasing, consistent with secular trend data indicating elevated levels of self-regarding behavior among Western populations (sometimes called the narcissism epidemic; Twenge and Campbell 2009). This sort of behavior constitutes a key component of the clever silly phenomenon in which the embrace of counterfactual beliefs is used to leverage social status via virtue signaling (e.g., the conflation of moral equality among individuals, sexes, and populations with biological equality) (Dutton and van der Linden 2015; Charlton 2009; Woodley 2010). There may be a greater number of influential persons inclined to disseminate such beliefs, in that the prevalence of phenotypes disposed toward egoistic behaviors may have increased in Western populations (per Twenge and coworkers’ research), and because egoists, specifically Machiavellians and narcissists, appear advantaged in the acquisition of elite societal stations (Spurk et al. 2015).

[Do Bad Guys Get Ahead or Fall Behind? Relationships of the Dark Triad of Personality With Objective and Subjective Career Success: http://sci-hub.tw/http://journals.sagepub.com/doi/abs/10.1177/1948550615609735

After controlling for other relevant variables (i.e., gender, age, job tenure, organization size, education, and work hours), narcissism was positively related to salary, Machiavellianism was positively related to leadership position and career satisfaction, and psychopathy was negatively related to all analyzed outcomes.]

...

By altering cultural norms, elite egoists may encourage the efflorescence of selfish behaviors against which some older and once highly influential cultural systems acted. For example, Christianity in various forms strongly promoted personal sacrifice for the good of groups and proscribed egoistic behaviors (Rubin 2015), but has declined significantly in terms of cultural power following modernization (Inglehart 1977). Thus, it is possible that a feedback loop exists wherein deleterious mutation accumulation raises population levels of egoism, either directly or indirectly, via the breakdown of developmental constraints on personality canalization; the resultantly greater number of egoists are then able to exploit relevant personality traits to attain positions of sociocultural influence; and through these … [more]
study  speculation  models  biodet  bio  sapiens  evolution  genetic-load  paternal-age  the-monster  slippery-slope  society  social-structure  free-riding  coordination  EGT  dynamical  🌞  fertility  dysgenics  eh  self-control  obesity  altruism  mutation  multi  twitter  social  commentary  perturbation  gnon  new-religion  science-anxiety  population-genetics  biophysical-econ  hmm  discipline  autism  scitariat  clown-world  epidemiology  malaise  sociology  demographic-transition  blowhards  model-organism  nonlinearity  civilization  expression-survival  universalism-particularism  order-disorder  trends  deep-materialism  values  ideology  domestication  cohesion  christopher-lasch  scale  patho-altruism  social-capital  behavioral-gen  madisonian  chart  nihil  aristos  piracy  theos  cultural-dynamics  roots  zeitgeist  rot  the-bones  counter-revolution  pdf  modernity  microfoundations  video  presentation  religion  christianity  health  longevity  ethnocentrism  genetic-correlation  👽  instinct 
march 2017 by nhaliday
Neurodiversity | West Hunter
Having an accurate evaluation of a syndrome as a generally bad thing isn’t equivalent to attacking those with that syndrome. Being a leper is a bad thing, not just another wonderful flavor of humanity [insert hot tub joke] , but that doesn’t mean that we have to spend our spare time playing practical jokes on lepers, tempting though that is.. Leper hockey. We can cure leprosy, and we are right to do so. Preventing deafness through rubella vaccination was the right thing too – deafness sucks. And so on. As we get better at treating and preventing, humans are going to get more uniform – and that’s a good thing. Back to normalcy!

focus: https://westhunt.wordpress.com/2017/02/22/neurodiversity/#comment-88691
interesting discussion of mutational load: https://westhunt.wordpress.com/2017/02/22/neurodiversity/#comment-88793

https://westhunt.wordpress.com/2013/04/30/blurry/
I was thinking again about the consequences of having more small-effect deleterious mutations than average. I don’t think that they would push hard in a particular direction in phenotype space – I don’t believe they would make you look weird, but by definition they would be bad for you, reduce fitness. I remembered a passage in a book by Steve Stirling, in which our heroine felt as if her brain ‘was moving like a mechanism of jewels and steel precisely formed.’ It strikes me that a person with an extra dollop of this kind of genetic load wouldn’t feel like that. And of course that heroine did have low genetic load, being the product of millennia of selective breeding, not to mention an extra boost from the Invisible Crown.

https://westhunt.wordpress.com/2013/04/30/blurry/#comment-12769
Well, what does the distribution of fitness burden by frequency look like for deleterious mutations of a given fitness penalty?
--
It’s proportional to the mutation rate for that class. There is reason to believe that there are more ways to moderately or slightly screw up a protein than to really ruin it, which indicates that mild mutations make up most load in protein-coding sequences. More of the genome is made up of conserved regulatory sequences, but mutations there probably have even milder effects, since few mutations in non-coding sequences cause a serious Mendelian disease.

https://westhunt.wordpress.com/2013/04/30/blurry/#comment-12803
I have wondered if there was some sort of evolutionary tradeoff between muscles and brains over the past hundred thousand years through dystrophin’s dual role. There is some evidence of recent positive selection among proteins that interact with dystrophin, such as DTNBP1 and DTNA.

Any novel environment where higher intelligence can accrue more caloric energy than brute strength alone (see: the invention of the bow) should relax the selection pressure for muscularity. The Neanderthals didn’t fare so well with the brute strength strategy.
--
Sure: that’s what you might call an inevitable tradeoff, a consequence of the laws of physics. Just as big guys need more food. But because of the way our biochemistry is wired, there can be tradeoffs that exist but are not inevitable consequences of the laws of physics – particularly likely when a gene has two fairly different functions, as they often do.
west-hunter  discussion  morality  philosophy  evolution  sapiens  psychology  psychiatry  disease  neuro  scitariat  ideology  rhetoric  diversity  prudence  genetic-load  autism  focus  👽  multi  poast  mutation  equilibrium  scifi-fantasy  rant  🌞  paternal-age  perturbation  nibble  ideas  iq  quotes  aphorism  enhancement  signal-noise  blowhards  dysgenics  data  distribution  objektbuch  tradeoffs  embodied  speculation  metabolic  volo-avolo  degrees-of-freedom  race  africa  genetics  genomics  bio  QTL  population-genetics  stylized-facts  britain  history  early-modern  pre-ww2  galton  old-anglo  giants  industrial-revolution  neuro-nitgrit  recent-selection  selection  medicine  darwinian  strategy  egalitarianism-hierarchy  CRISPR  biotech  definition  reflection  poetry  deep-materialism  EGT  discrimination  conceptual-vocab 
february 2017 by nhaliday
INFECTIOUS CAUSATION OF DISEASE: AN EVOLUTIONARY PERSPECTIVE
A New Germ Theory: https://www.theatlantic.com/magazine/archive/1999/02/a-new-germ-theory/377430/
The dictates of evolution virtually demand that the causes of some of humanity's chronic and most baffling "noninfectious" illnesses will turn out to be pathogens -- that is the radical view of a prominent evolutionary biologist

A LATE-SEPTEMBER heat wave enveloped Amherst College, and young people milled about in shorts or sleeveless summer frocks, or read books on the grass. Inside the red-brick buildings framing the leafy quadrangle students listened to lectures on Ellison and Emerson, on Paul Verlaine and the Holy Roman Empire. Few suspected that strains of the organism that causes cholera were growing nearby, in the Life Sciences Building. If they had known, they would probably not have grasped the implications. But these particular strains of cholera make Paul Ewald smile; they are strong evidence that he is on the right track. Knowing the rules of evolutionary biology, he believes, can change the course of infectious disease.

https://www.theatlantic.com/past/docs/issues/99feb/germ2.htm
I HAVE a motto," Gregory Cochran told me recently. "'Big old diseases are infectious.' If it's common, higher than one in a thousand, I get suspicious. And if it's old, if it has been around for a while, I get suspicious."

https://www.theatlantic.com/past/docs/issues/99feb/germ3.htm
pdf  study  speculation  bio  evolution  sapiens  parasites-microbiome  red-queen  disease  west-hunter  🌞  unit  nibble  len:long  biodet  EGT  wild-ideas  big-picture  epidemiology  deep-materialism  🔬  spearhead  scitariat  maxim-gun  ideas  lens  heterodox  darwinian  equilibrium  medicine  heuristic  spreading  article  psychiatry  QTL  distribution  behavioral-gen  genetics  population-genetics  missing-heritability  gender  sex  sexuality  cardio  track-record  aging  popsci  natural-experiment  japan  asia  meta:medicine  profile  ability-competence  empirical  theory-practice  data  magnitude  scale  cost-benefit  is-ought  occam  parsimony  stress  GWAS  roots  explanans  embodied  obesity  geography  canada  britain  anglo  trivia  cocktail  shift  aphorism  stylized-facts 
february 2017 by nhaliday
Association of the Dopamine D4 Receptor (DRD4) Gene and Approach-Related Personality Traits: Meta-Analysis and New Data - Biological Psychiatry
Our initial meta-analysis supported the association of the DRD4 C-521T polymorphism, but not the VNTR polymorphism, with approach-related traits. This conclusion was qualified by evidence of significant publication bias and the failure to detect association in a replication sample comprising individuals at the extremes of the trait distribution. The association of the C-521T polymorphism observed in our initial meta-analysis was robust to the inclusion of these new data, but our revised meta-analysis indicated that the association was present for measures of novelty seeking and impulsivity but not for measures of extraversion.

Meta-analysis of the heterogeneity in association of DRD4 7-repeat allele and AD/HD: stronger association with AD/HD combined type: https://www.ncbi.nlm.nih.gov/pubmed/20468072

Molecular Psychiatry - High prevalence of rare dopamine receptor D4 alleles in children diagnosed with attention-deficit hyperactivity disorder: http://www.nature.com/mp/journal/v8/n5/full/4001350a.html
study  meta-analysis  biodet  psychology  cog-psych  neuro  genetics  replication  QTL  candidate-gene  personality  attention  neuro-nitgrit  behavioral-gen  extra-introversion  multi  disease  psychiatry  epidemiology  GWAS 
february 2017 by nhaliday
Confounder Of The Day: How Sexy Your Parents Were | Slate Star Codex
- "paternal age effect" just a selection effect (men w/ issues end up having kids later due to difficulty finding a mate)
- one other suggested inconsistent explanation: spermatogenic selfish-gene effect
- interesting discussion of sperm freezing
yvain  ssc  psychiatry  medicine  aging  developmental  study  summary  genetic-load  hmm  biodet  causation  planning  parenting  paternal-age  disease  sex  gender  selfish-gene  gwern  confounding  EGT  epidemiology  null-result  sib-study  ratty  behavioral-gen  cooperate-defect 
february 2017 by nhaliday
The Gut-Brain Axis in Healthy Females: Lack of Significant Association between Microbial Composition and Diversity with Psychiatric Measures
We found no significant associations between microbial markers of gut composition and diversity and scores on psychiatric measures of anxiety, depression, eating-related thoughts and behaviors, stress, or personality in a large cohort of healthy adult females
study  psychology  cog-psych  parasites-microbiome  embodied-cognition  regularizer  psychiatry  disease  correlation  epidemiology  null-result 
january 2017 by nhaliday
Selection against variants in the genome associated with educational attainment
first direct, genotypic, longitudinal evidence I think?
fulltext: https://www.dropbox.com/s/9vq5t6urtu930xe/2017-kong.pdf

Epidemiological and genetic association studies show that genetics play an important role in the attainment of education. Here, we investigate the effect of this genetic component on the reproductive history of 109,120 Icelanders and the consequent impact on the gene pool over time. We show that an educational attainment polygenic score, POLY_EDU, constructed from results of a recent study is associated with delayed reproduction (P < 10^−100) and fewer children overall. _The effect is stronger for women and remains highly significant after adjusting for educational attainment._ Based on 129,808 Icelanders born between 1910 and 1990, we find that the average POLY_EDU has been declining at a rate of ∼0.010 standard units per decade, which is substantial on an evolutionary timescale. Most importantly, because POLY_EDU only captures a fraction of the overall underlying genetic component the latter could be declining at a rate that is two to three times faster.

- POLY_EDU has negative effect on RS for men, while EDU itself (or just controlling for POLY_EDU?) has positive effect
- also has some trends for height (0) and schizophrenia (-)

Natural selection making 'education genes' rarer, says Icelandic study: https://www.reddit.com/r/slatestarcodex/comments/5opugw/natural_selection_making_education_genes_rarer/
Gwern pretty pessimistic
http://www.smithsonianmag.com/smart-news/study-shows-genes-associated-education-are-declining-180961836/

http://andrewgelman.com/2017/07/30/iceland-education-gene-trend-kangaroo/

The Marching Morons: https://westhunt.wordpress.com/2017/01/22/the-marching-morons/
There’s a new paper out on how the frequency of variants that affect educational achievement (which also affect IQ) have been changing over time in Iceland. Naturally, things are getting worse.

We don’t have all those variants identified yet, but from the fraction we do know and the rate of change, they estimate that genetic potential for IQ is dropping about 0.30 point per decade – 3 points per century, about a point a generation. In Iceland.

Sounds reasonable, in the same ballpark as demography-based estimates.

It would be interesting to look at moderately recent aDNA and see when this trend started – I doubt if has been going on very long. [ed.: I would guess since the demographic transition/industrial revolution, though, right?]

This is the most dangerous threat the human race faces.

Paper Review: Icelandic Dysgenics: http://www.unz.com/akarlin/paper-review-icelandic-dysgenics/
The main mechanism was greater age at first child, not total number of children (i.e. the clever are breeding more slowly).
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january 2017 by nhaliday
The Experts | West Hunter
It seems to me that not all people called experts actually are. In fact, there are whole fields in which none of the experts are experts. But let’s try to define terms.

...

Along these lines, I’ve read Tetlock’s book, Expert Political Judgment. A funny, funny, book. I will have more to say on that later.

USSR: https://westhunt.wordpress.com/2014/10/20/the-experts/#comment-60760
iraq war:
https://westhunt.wordpress.com/2014/10/20/the-experts/#comment-60653
Of course it is how Bush sold the war. Selling the war involving statements to the press, leaks, etc, not a Congressional resolution, which is the product of that selling job. Leaks to that lying slut at the New York Times, Judith Miller, for example.

Actively seeking a nuclear weapons capacity would have meant making fissionables, or building facilities to make fissionables. That hadn’t happened, and it was impossible for Iraq to have done so, given that any such effort had to be undetectable (because we hadn’t detected it with our ‘national technical means’, spy satellites and such) and given their limited resources in men, money, and materiel. Iraq had done nothing along these lines. Absolutely nothing.

https://westhunt.wordpress.com/2014/10/20/the-experts/#comment-60674
You don’t even know what yellow cake is. It is true that Saddam had had a nuclear program before the Gulf War, although it had not come too close to a weapon – but that program had been destroyed, and could not be rebuilt A. in a way invisible to our spy satellites and B with no money, because of sanctions.

The 550 tons of uranium oxide- unenriched uranium oxide – was a leftover from the earlier program. Under UN seal, and those seals had not been broken. Without enrichment, and without a means of enrichment, it was useless.

What’s the point of pushing this nonsense? somebody paying you?

The President was a moron, the Government of the United States proved itself a pack of fools,as did the New York Times, the Washington Post, Congress, virtually all of the pundits, etc. etc. And undoubtedly you were a fool as well: you might as well deal with it, because the truth is not going to go away.

interesting discussion of battle fatigue and desertion: https://westhunt.wordpress.com/2014/10/20/the-experts/#comment-60709
Actually, I don’t know how Freudian those Army psychologists were in 1944: they may have been useless in some other way. The gist is that in the European theater, for example in the Normandy campaign, the US had a much higher rate of psychological casualties than the Germans. “Both British and American psychiatrists were struck by the ‘apparently few cases of psychoneurosis’ among German prisoners of war. ” They were lower in the Red Army, as well.

In the Pacific theater, combat fatigue was even worse for US soldiers, but rare among the Japanese.

...

The infantry took most of the casualties – it was a very dangerous, unpleasant job. People didn’t like being in the infantry. In the American Army, and to a lesser extent, the British Army, getting into medical evacuation channels was a way to avoid getting killed. Not so much in the German Army: suspected malingerers were shot. In the American Army, they weren’t. That’s the most importance difference between the Germans and Americans affecting the ‘combat fatigue’ rate – the Germans didn’t put up with it. They did have some procedures, but they all ended up putting the guy back in combat fairly rapidly.

Even for desertion, only ONE American soldier was executed. In the Germany Army, 20,000. It makes a difference. We ran a soft war: since we ended up with whole divisions out of the fight, we probably would have done better (won faster, lost fewer guys) if we had been harsher on malingerers and deserters.

more on emdees: https://westhunt.wordpress.com/2014/10/20/the-experts/#comment-60697
As for your idea that doctors improve with age, I doubt it. So do some other people: for example, in this article in Annals of Internal Medicine (Systematic review: the relationship between clinical experience and quality of health care), they say “Overall, 32 of the 62 (52%) evaluations reported decreasing performance with increasing years in practice for all outcomes assessed; 13 (21%) reported decreasing performance with increasing experience for some outcomes but no association for others; 2 (3%) reported that performance initially increased with increasing experience, peaked, and then decreased (concave relationship); 13 (21%) reported no association; 1 (2%) reported increasing performance with increasing years in practice for some outcomes but no association for others; and 1 (2%) reported increasing performance with increasing years in practice for all outcomes. Results did not change substantially when the analysis was restricted to studies that used the most objective outcome measures.

I don’t how well that 25-year old doctor with an IQ of 160 would do, never having met anyone like that. I do know a mathematician who has an IQ around 160 and was married to a doctor, but she* dumped him after he put her through med school and came down with lymphoma.

And that libertarian friend I mentioned, who said that although quarantine would have worked against AIDS, better that we didn’t, despite the extra hundreds of thousands of deaths that resulted – why, he’s a doctor.

*all the other fifth-years in her program also dumped their spouses. Catching?

climate change: https://westhunt.wordpress.com/2014/10/20/the-experts/#comment-60787
I think that predicting climate is difficult, considering the complex feedback loops, but I know that almost every right-wing thing said about it that I have checked out turned out to be false.
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january 2017 by nhaliday
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